PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G278800.1.p
Common NameGLYMA_08G278800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 181aa    MW: 20423.4 Da    PI: 10.7904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G278800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.1e-16352255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr+++eIrdps+   + r++lg+f+tae   +a++ a++++ g
  Glyma.08G278800.1.p  3 HFRGVRKRP-WGRYASEIRDPSK---KSRVWLGTFDTAEATTRAYDVAAREFCG 52
                         69*******.**********965...6**********************99866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.68360IPR001471AP2/ERF domain
CDDcd000182.85E-28360No hitNo description
PfamPF008471.9E-9352IPR001471AP2/ERF domain
SMARTSM003803.3E-35366IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-19361IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-30360IPR001471AP2/ERF domain
PRINTSPR003672.5E-9415IPR001471AP2/ERF domain
PRINTSPR003672.5E-92642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVHFRGVRKR PWGRYASEIR DPSKKSRVWL GTFDTAEATT RAYDVAAREF CGPKTKTNFP  60
LPLENPRLRR LRRSLASRPQ PCPRRSRIRS IPLPALYRRG AAANPFLYYD VVLCAGMGGP  120
RGFAFGYNHH PVAATEFHAT TSDLDSSSSS VIDLMKVKGK FPESSIQIRI NEDALYNIFY  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18361564ATERF1
3gcc_A4e-18361564ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.349551e-74cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| root| stem
Gma.63801e-74cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| seed coat| somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362101e-107AC236210.2 Glycine max clone GM_WBc0012G22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238595.12e-43ethylene-responsive element binding factor 4
TrEMBLA0A0R0ITQ21e-132A0A0R0ITQ2_SOYBN; Uncharacterized protein
STRINGGLYMA08G38171.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-29erf domain protein 9